Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-109/megassr/results/hub_GCF_046719855.1/fasta/hub_GCF_046719855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              165
Total size of examined sequences (bp):           5212993
Total number of identified SSRs:                 14
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	4
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
GC	-	-	-	1								1
CGC	-	-	1									1
CGG	-	-	1									1
TGA	-	-	1									1
AGTTG	1											1
CAGCG	1											1
CCGCG	1											1
GCGCT	1											1
AAGCGA	1											1
ACACCA											1	1
ATGGCG		1										1
CGACTT	1											1
GCGCCA	1											1
TTGATA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG/CG	-	-	-	1								1
ATC/ATG	-	-	1									1
CCG/CGG	-	-	2									2
AACTC/AGTTG	1											1
AGCGC/CGCTG	2											2
CCGCG/CGCGG	1											1
AAAGCG/CGCTTT	1											1
AACACC/GGTGTT											1	1
AAGTCG/ACTTCG	1											1
AATATC/ATATTG	1											1
AGCGCC/CGCTGG	1											1
ATCGCC/ATGGCG		1										1
