Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-125/megassr/results/hub_GCF_046603055.1/fasta/hub_GCF_046603055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              52
Total size of examined sequences (bp):           5210500
Total number of identified SSRs:                 48
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	4
3	18
5	7
6	15

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																							1																					3	4
CG	-	-	-	2	1																																																																																																									3
GC	-	-	-	1																																																																																																										1
CCG	-	-	3																																																																																																											3
CGC	-	-	2	1																																																																																																										3
CGG	-	-	3																																																																																																											3
CTG	-	-	4																																																																																																											4
GAC	-	-	2																																																																																																											2
GCC	-	-		1																																																																																																										1
GCG	-	-	1																																																																																																											1
GGT	-	-	1																																																																																																											1
ATAAA	1																																																																																																													1
CCACG	1																																																																																																													1
CCGGA	1																																																																																																													1
CGCGG	1																																																																																																													1
GCCGG	1																																																																																																													1
GCGCC	1																																																																																																													1
TTCCC	1																																																																																																													1
CGACTT	1																																																																																																													1
CTCACC	1																																																																																																													1
CTCACT	1																																																																																																													1
CTGGTG	1																																																																																																													1
GACGAA	1																																																																																																													1
GAGTCG	4																																																																																																													4
GATACC	1																																																																																																													1
GCTCCG		1																																																																																																												1
GGCCAG	1																																																																																																													1
GGGGCT	1																																																																																																													1
TCGGAA	1																																																																																																													1
TTCCAC	1																																																																																																													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	109	110	111	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																							1																					3	4
CG/CG	-	-	-	3	1																																																																																																									4
ACC/GGT	-	-	1																																																																																																											1
ACG/CGT	-	-	2																																																																																																											2
AGC/CTG	-	-	4																																																																																																											4
CCG/CGG	-	-	9	2																																																																																																										11
AAAAT/ATTTT	1																																																																																																													1
AAGGG/CCCTT	1																																																																																																													1
ACCGG/CCGGT	1																																																																																																													1
ACGCC/CGTGG	1																																																																																																													1
CCCGG/CCGGG	1																																																																																																													1
CCGCG/CGCGG	2																																																																																																													2
AAGACG/CGTCTT	1																																																																																																													1
AAGTCG/ACTTCG	1																																																																																																													1
AAGTGG/ACTTCC	1																																																																																																													1
AATCGG/ATTCCG	1																																																																																																													1
ACCAGC/CTGGTG	1																																																																																																													1
ACCCTC/AGGGTG	1																																																																																																													1
ACCGAT/ATCGGT	1																																																																																																													1
ACTCCG/AGTCGG	4																																																																																																													4
ACTCTC/AGAGTG	1																																																																																																													1
AGCCCC/CTGGGG	1																																																																																																													1
AGCCGG/CCGGCT		1																																																																																																												1
AGGGCC/CCCTGG	1																																																																																																													1
