Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_046602955.1/fasta/hub_GCF_046602955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              46
Total size of examined sequences (bp):           5559106
Total number of identified SSRs:                 41
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  9
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	8
3	14
5	8
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-		1	1
CG	-	-	-	4	1	5
GC	-	-	-	2		2
ATG	-	-	1			1
CAG	-	-	1			1
CCA	-	-	1			1
CCG	-	-	1			1
CGG	-	-	2			2
CTG	-	-	1			1
GCG	-	-	1	1		2
GCT	-	-	1			1
GGC	-	-	1	1		2
TCG	-	-	1			1
TGA	-	-	1			1
CGCCG	1					1
CGCGG	1					1
GCCGG	1					1
GCGCC	1					1
GGGAA	1					1
TCACA	1					1
TTATC	1					1
TTCCC	1					1
CACCAG	1				1	2
CAGCAA	1					1
CGCCTG	1					1
CTGGCG	1					1
GAAGTC	1					1
GATACC	1					1
GCTCCG		1				1
TCAGCG	1					1
TGCGGC	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-		1	1
CG/CG	-	-	-	6	1	7
ACC/GGT	-	-	1			1
ACG/CGT	-	-	1			1
AGC/CTG	-	-	3			3
ATC/ATG	-	-	2			2
CCG/CGG	-	-	5	2		7
AAGAT/ATCTT	1					1
AAGGG/CCCTT	2					2
ACATC/ATGTG	1					1
CCCGG/CCGGG	1					1
CCGCG/CGCGG	3					3
AACAGC/CTGTTG	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1				1	2
ACCGAT/ATCGGT	1					1
ACGCTG/AGCGTC	1					1
AGCCGC/CGGCTG	1					1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	1					1
AGGCGC/CCTGCG	1					1
