Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-142/megassr/results/hub_GCF_046543825.1/fasta/hub_GCF_046543825.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           4555218
Total number of identified SSRs:                 11
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
4	2
5	6
6	3

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
TAAA	-							1				1
TTAA	-	1										1
AAAAT	3											3
AATTT	1											1
ATTTA	1											1
TTTTC	1											1
ATTATC	1											1
TGCAAG		1										1
TTCAAG											1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AAAT/ATTT	-							1				1
AATT/AATT	-	1										1
AAAAG/CTTTT	1											1
AAAAT/ATTTT	3											3
AAATT/AATTT	2											2
AACTTG/AAGTTC											1	1
AAGTGC/ACTTGC		1										1
AATGAT/ATCATT	1											1
