Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-150/megassr/results/hub_GCF_046543785.1/fasta/hub_GCF_046543785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              10
Total size of examined sequences (bp):           4725610
Total number of identified SSRs:                 23
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	5
5	7
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
TG	-	-	-	1			1
AAT	-	-	1				1
GAT	-	-		1			1
TAA	-	-	1				1
TGG	-	-	1				1
TTA	-	-	1				1
AAAAT	1						1
AACCC	1						1
AGAAA	1						1
ATTTA			1				1
GTTTT	1						1
TAACT				1			1
TTATT	1						1
AAAATG	1						1
ATGAAA	1						1
ATTCGT	1						1
ATTGCC			1				1
CTTCAA	1						1
TGCAGC	1						1
TGGTGT						1	1
TTTCAT	1						1
TTTGAT	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
AT/AT	-	-	-	1			1
AAT/ATT	-	-	3				3
ACC/GGT	-	-	1				1
ATC/ATG	-	-		1			1
AAAAC/GTTTT	1						1
AAAAG/CTTTT	1						1
AAAAT/ATTTT	2						2
AAATT/AATTT			1				1
AACCC/GGGTT	1						1
AACTT/AAGTT				1			1
AAAATC/ATTTTG	1						1
AAAATG/ATTTTC	3						3
AACACC/GGTGTT						1	1
AACTTC/AAGTTG	1						1
AATACG/ATTCGT	1						1
AATGGC/ATTGCC			1				1
AGCTGC/AGCTGC	1						1
