Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-149/megassr/results/hub_GCF_046543745.1/fasta/hub_GCF_046543745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              16
Total size of examined sequences (bp):           4675820
Total number of identified SSRs:                 23
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	10
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC	-	-	-								1	1
TG	-	-	-	1								1
AGC	-	-	1									1
CAT	-	-	1									1
TGG	-	-	1									1
TTGT	-	1										1
AAAAT	1											1
AATAA	1											1
AGAAA	1											1
ATTTA		1										1
ATTTT	2											2
CCCTC	1											1
GTTTT	1											1
TATTT	1											1
TTATT	1											1
AAATAG	1											1
ATGGAG		1										1
ATTCGT	1											1
CTTCAA	1											1
TGCCAT		1										1
TGGTGT	1											1
TTGGTG	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	1							1	2
ACC/GGT	-	-	1									1
AGC/CTG	-	-	1									1
ATC/ATG	-	-	1									1
AAAC/GTTT	-	1										1
AAAAC/GTTTT	1											1
AAAAG/CTTTT	1											1
AAAAT/ATTTT	6											6
AAATT/AATTT		1										1
AGGGG/CCCCT	1											1
AAATAG/ATTTCT	1											1
AACACC/GGTGTT	2											2
AACTTC/AAGTTG	1											1
AATACG/ATTCGT	1											1
AATGGC/ATTGCC		1										1
AGATGG/ATCTCC		1										1
