Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-108/megassr/results/hub_GCF_045891215.1/fasta/hub_GCF_045891215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              184
Total size of examined sequences (bp):           4848282
Total number of identified SSRs:                 19
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	5
3	7
5	2
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
CG	-	-	-	2		2
GC	-	-	-	3		3
CAG	-	-	2			2
CGG	-	-	1			1
GCA	-	-	1			1
GCG	-	-	1			1
GGC	-	-	1			1
GTG	-	-	1			1
CGCGC	1					1
GGCCG	1					1
AGATAC				1		1
CCATCG	1					1
GAAGTC	1					1
GTTGTC					1	1
TGCCGC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
CG/CG	-	-	-	5		5
ACC/GGT	-	-	1			1
AGC/CTG	-	-	3			3
CCG/CGG	-	-	3			3
CCCGG/CCGGG	1					1
CCGCG/CGCGG	1					1
AACGAC/CGTTGT					1	1
AAGTCG/ACTTCG	1					1
ACAGAT/ATCTGT				1		1
AGCGGC/CCGCTG	1					1
ATCGCC/ATGGCG	1					1
