Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-107/megassr/results/hub_GCF_045796565.1/fasta/hub_GCF_045796565.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              126
Total size of examined sequences (bp):           4695344
Total number of identified SSRs:                 31
Number of SSR containing sequences:              25
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	6
3	7
5	6
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																1		1	2
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																																	1
CG	-	-	-	1																																																																1
GC	-	-	-	5																																																																5
CCA	-	-	1																																																																	1
CGG	-	-	1																																																																	1
CTG	-	-	1			1																																																														2
GCA	-	-	1																																																																	1
GCT	-	-	1																																																																	1
GGC	-	-	1																																																																	1
AATCA	1																																																																			1
AATGG	2		1																																																																	3
GGAAT	1																																																																			1
GGCGC	1																																																																			1
ACCATG		1																																																																		1
ACCCTA	1																																																																			1
CAGAAC	1																																																																			1
CCATCG	1																																																																			1
CGACTT	1																																																																			1
CGCCAG	1																																																																			1
GAAGAT	1																																																																			1
GCCAGC	1																																																																			1
TCAGCT	1																																																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-		1																																														1		1	3
CG/CG	-	-	-	6																																																																6
ACC/GGT	-	-	1																																																																	1
AGC/CTG	-	-	3			1																																																														4
CCG/CGG	-	-	2																																																																	2
AAATC/ATTTG	1																																																																			1
AATGG/ATTCC	3		1																																																																	4
CCGCG/CGCGG	1																																																																			1
AACCAG/CTGGTT	1																																																																			1
AACCCT/AGGGTT	1																																																																			1
AAGATG/ATCTTC	1																																																																			1
AAGCTG/AGCTTC	1																																																																			1
AAGTCG/ACTTCG	1																																																																			1
ACCATG/ATGGTC		1																																																																		1
AGCGCC/CGCTGG	2																																																																			2
ATCGCC/ATGGCG	1																																																																			1
