Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-106/megassr/results/hub_GCF_045795785.1/fasta/hub_GCF_045795785.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              170
Total size of examined sequences (bp):           4832877
Total number of identified SSRs:                 16
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	4
3	5
5	1
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG	-	-	-	2																			2
GC	-	-	-	2																			2
AGC	-	-	1																				1
CAG	-	-	1																				1
CCG	-	-	1																				1
CGC	-	-	1																				1
TGC	-	-	1																				1
GCGCA	1																						1
CACGAG				1																			1
CAGGTT	1																						1
CGACTT	1																						1
GAAGAT	1																						1
GCTGGC	1																						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1	1
CG/CG	-	-	-	4																			4
AGC/CTG	-	-	3																				3
CCG/CGG	-	-	2																				2
AGCGC/CGCTG	1																						1
AACCTG/AGGTTC	1																						1
AAGATG/ATCTTC	1																						1
AAGTCG/ACTTCG	1																						1
ACGAGC/CGTGCT				1																			1
AGCGCC/CGCTGG	1																						1
