Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-102/megassr/results/hub_GCF_045795745.1/fasta/hub_GCF_045795745.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              100
Total size of examined sequences (bp):           4670685
Total number of identified SSRs:                 29
Number of SSR containing sequences:              20
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	4
2	7
3	7
5	2
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1			1				1	4
CG	-	-	-	2																									2
GC	-	-	-	5																									5
CAG	-	-	1																										1
CGG	-	-	2																										2
CTG	-	-	2																										2
GGC	-	-	1	1																									2
AACAC	1																												1
CGCCA	1																												1
ACCGTC	1																												1
ATCTTC	1																												1
CCATCG	1																												1
CTGGCG	1																												1
GAAGTC	1																												1
GCCAGC	3																												3
TGGTCA		1																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1			1			1				1	4
CG/CG	-	-	-	7																									7
AGC/CTG	-	-	3																										3
CCG/CGG	-	-	3	1																									4
AACAC/GTGTT	1																												1
ACGCC/CGTGG	1																												1
AAGATG/ATCTTC	1																												1
AAGTCG/ACTTCG	1																												1
ACCATG/ATGGTC		1																											1
ACCGTC/ACGGTG	1																												1
AGCGCC/CGCTGG	4																												4
ATCGCC/ATGGCG	1																												1
