Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-105/megassr/results/hub_GCF_044500605.1/fasta/hub_GCF_044500605.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              3
Total size of examined sequences (bp):           4814064
Total number of identified SSRs:                 22
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
3	3
5	2
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CG	-	-	-	4								4
GC	-	-	-	1	1							2
TC	-	-	-	1								1
GGC	-	-	1									1
GGT	-	-	1									1
TCG	-	-	1									1
GCGTG								1				1
TTTTC		1										1
AGCGCC	1											1
ATGGTC		1										1
ATGTTC			1									1
CAGGCG	1											1
CCAGCG		1										1
CCATCG	1											1
CGAAGC											1	1
CGACTT	1											1
GCTGGC	1											1
GTGGCG	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AG/CT	-	-	-	1								1
CG/CG	-	-	-	5	1							6
ACC/GGT	-	-	1									1
ACG/CGT	-	-	1									1
CCG/CGG	-	-	1									1
AAAAG/CTTTT		1										1
ACGCC/CGTGG								1				1
AACATG/ATGTTC			1									1
AAGCCG/CGGCTT											1	1
AAGTCG/ACTTCG	1											1
ACCATG/ATGGTC		1										1
ACCGCC/CGGTGG	1											1
AGCGCC/CGCTGG	2	1										3
AGGCGC/CCTGCG	1											1
ATCGCC/ATGGCG	1											1
