Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-89/megassr/results/hub_GCF_044143025.1/fasta/hub_GCF_044143025.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              94
Total size of examined sequences (bp):           5554212
Total number of identified SSRs:                 36
Number of SSR containing sequences:              22
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	8
4	2
5	7
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG	-	-	-	2											2
ACC	-	-	1												1
CGG	-	-	1												1
GCG	-	-	1	1											2
GGC	-	-	1	1											2
GGT	-	-	1												1
TGG	-	-						1							1
CAGG	-													1	1
TGGC	-	1													1
CAGGC	1														1
CCAAT	1														1
CCCTG	1														1
CGCCC	1														1
GCCAA	1														1
GCGCC	1														1
GCGGG	1														1
AAAAGC	1														1
AAGCAA	1														1
ACCTGC	1														1
AGCAAG	1	1													2
CAACGG		1													1
CTGCTA	1														1
GACCAT		1													1
GCCATG	1														1
GCCTTG	1														1
GGCAAC			1												1
GGCCAT	1														1
GGCCTG	1														1
GGTGCC	1														1
GGTGTT	1														1
TCAGGT		1													1
TGACCT	1														1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	total
CG/CG	-	-	-	2											2
ACC/GGT	-	-	2					1							3
CCG/CGG	-	-	3	2											5
AGCC/CTGG	-	1													1
AGGC/CCTG	-													1	1
AAGCC/CTTGG	1														1
AATCC/ATTGG	1														1
AGGCC/CCTGG	1														1
AGGGC/CCCTG	1														1
CCCCG/CGGGG	2														2
CCGCG/CGCGG	1														1
AAAAGC/CTTTTG	2														2
AACACC/GGTGTT	1														1
AACCTG/AGGTTC		1													1
AACGGC/CCGTTG		1	1												2
AAGAGC/CTCTTG	1	1													2
AAGGCC/CCTTGG	1														1
AAGGTC/ACCTTG	1														1
ACCATG/ATGGTC		1													1
ACCGGC/CCGGTG	1														1
ACCTGC/AGGTGC	1														1
ACTGCT/AGCAGT	1														1
AGGCCC/CCTGGG	1														1
ATGGCC/ATGGCC	2														2
