Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-88/megassr/results/hub_GCF_043496865.1/fasta/hub_GCF_043496865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              34
Total size of examined sequences (bp):           6311300
Total number of identified SSRs:                 31
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	2
5	9
6	17

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-															1	1
CG	-	-	-	1																													1
GC	-	-	-	1																													1
CAC	-	-	2																														2
CAACA	1																																1
CGCCG	1																																1
CGCGG	1																																1
GCCGC	1																																1
GCCTT	1																																1
GGCGA	1																																1
GGCGC	1																																1
GGGTC		1																															1
TCGCG	1																																1
ATGGCC	1																																1
CAAGAT	1																																1
CATCGA	1																																1
CCCTAG	1																																1
CCGACC	1																																1
CGCCTG	1																																1
CTCCCT			1																														1
CTCGAC	1																																1
GCAGGT		1																															1
GCCGAC	1																																1
GCGCCA	1																																1
GCGCTG	1																																1
GCGGTG		1																															1
GGCCTG	1																																1
TCGGGC	1																																1
TGGCGG	1																																1
TTCGGC	1																																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-															1	1
CG/CG	-	-	-	2																													2
ACC/GGT	-	-	2																														2
AACAC/GTGTT	1																																1
AAGGC/CCTTG	1																																1
ACCCG/CGGGT		1																															1
ACGCG/CGCGT	1																																1
AGGCG/CCTCG	1																																1
CCGCG/CGCGG	4																																4
AAGATC/ATCTTG	1																																1
AAGCCG/CGGCTT	1																																1
ACATCG/ATGTCG	1																																1
ACCCCG/CGGGGT	1																																1
ACCGCC/CGGTGG	1	1																															2
ACCTCG/AGGTCG	1																																1
ACCTGC/AGGTGC		1																															1
ACGCCG/CGGCGT	1																																1
AGAGGG/CCCTCT			1																														1
AGCCCG/CGGGCT	1																																1
AGCCCT/AGGGCT	1																																1
AGCGCC/CGCTGG	2																																2
AGGCCC/CCTGGG	1																																1
AGGCGC/CCTGCG	1																																1
ATGGCC/ATGGCC	1																																1
