Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-82/megassr/results/hub_GCF_043195435.1/fasta/hub_GCF_043195435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           5431202
Total number of identified SSRs:                 44
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	11
3	16
4	1
5	4
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AG	-	-	-	1		1
CG	-	-	-	3	3	6
GC	-	-	-	4		4
CAG	-	-	1			1
CCG	-	-	4			4
CGA	-	-	1			1
CGC	-	-	1	2		3
CGG	-	-	1			1
CTG	-	-	1			1
GAC	-	-	1			1
GCA	-	-	1			1
GCG	-	-	1			1
GCT	-	-	1			1
GGC	-	-	1			1
CCGA	-	1				1
CCGCG	1					1
CGCCG	1					1
GCACT	1					1
GGCGC	1					1
CAGCGC	1					1
CCCGCT		1				1
CGGGAG	1					1
CGGTGG	1					1
CTGGTG	1					1
GAAGTC	1					1
GCCTGG	1					1
GCGGTA		1				1
GCTCCG		1				1
GGCGCC	1					1
TCTTCG	1					1
TTCCAC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AG/CT	-	-	-	1		1
CG/CG	-	-	-	7	3	10
ACG/CGT	-	-	2			2
AGC/CTG	-	-	4			4
CCG/CGG	-	-	8	2		10
ACCG/CGGT	-	1				1
ACTGC/AGTGC	1					1
CCGCG/CGCGG	3					3
AAGACG/CGTCTT	1					1
AAGTCG/ACTTCG	1					1
AAGTGG/ACTTCC	1					1
ACCAGC/CTGGTG	1					1
ACCGCC/CGGTGG	1					1
ACCGCT/AGCGGT		1				1
AGCCGG/CCGGCT		1				1
AGCGCC/CGCTGG	1					1
AGCGGG/CCCGCT	1	1				2
AGGCCC/CCTGGG	1					1
CCGGCG/CCGGCG	1					1
