Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-81/megassr/results/hub_GCF_041951335.1/fasta/hub_GCF_041951335.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              1
Total size of examined sequences (bp):           7193015
Total number of identified SSRs:                 54
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	11
4	1
5	13
6	26

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG	-	-	-	2										2
GC	-	-	-	1										1
CAC	-	-	1											1
CCG	-	-	3											3
CGC	-	-	2											2
GCC	-	-	1											1
GCG	-	-	1											1
GGC	-	-	1											1
GGT	-	-	1											1
GTG	-	-							1					1
CTAA	-			1										1
ACGGA			1											1
CCGCC	1													1
CGCCG	2													2
CGCGC	1													1
CTCGC	1													1
GCATC	1													1
GCGCC	1													1
GCGCT	1													1
GCGGC	4													4
ACAGCC													1	1
CACGAA		1												1
CCAGCG	1													1
CCGAGC						1								1
CCGCGC	1													1
CCTCGG	1													1
CCTGAC	1													1
CGCCAG	1													1
CGCCGA		1												1
CGCCGT	1													1
CGCTGT	1													1
CGGGCT								1						1
CGTCGG			1											1
CGTGAT			1											1
CTGGGC			1											1
GCAGGC	1													1
GCCCTC	1													1
GCCCTG	1													1
GCCTGG	1													1
GCGCCT	1													1
GGCCAT	1													1
GGCCCA	1													1
GGCCTT	1													1
GTTGGC									1					1
TCTGTA	1													1
TGTTCC	1													1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	total
CG/CG	-	-	-	3										3
ACC/GGT	-	-	2						1					3
CCG/CGG	-	-	8											8
AACT/AGTT	-			1										1
AACGG/CCGTT			1											1
AGCGC/CGCTG	1													1
AGGCG/CCTCG	1													1
ATCGC/ATGCG	1													1
CCCCG/CGGGG	1													1
CCGCG/CGCGG	8													8
AACACG/CGTGTT		1												1
AACAGG/CCTGTT	1													1
AACGCC/CGTTGG									1					1
AAGGCC/CCTTGG	1													1
ACAGAT/ATCTGT	1													1
ACAGCC/CTGTGG													1	1
ACAGCG/CGCTGT	1													1
ACCCTG/AGGGTC	1													1
ACGATC/ATCGTG			1											1
ACGCCG/CGGCGT		1	1											2
ACGGCG/CCGTCG	1													1
AGCCCG/CGGGCT						1		1						2
AGCGCC/CGCTGG	2													2
AGGCCC/CCTGGG	2		1											3
AGGCCG/CCTCGG	1													1
AGGCGC/CCTGCG	2													2
AGGGCC/CCCTGG	1													1
AGGGCG/CCCTCG	1													1
ATGGCC/ATGGCC	1													1
CCCGCG/CGCGGG	1													1
