Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-85/megassr/results/hub_GCF_041449435.1/fasta/hub_GCF_041449435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              315
Total size of examined sequences (bp):           5912776
Total number of identified SSRs:                 35
Number of SSR containing sequences:              16
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	7
5	7
6	21

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC	-	-	-	1									1
CG	-	-	-	2									2
GC	-	-	-	4									4
CATCA	1												1
CTTGC	1												1
GAGGC	1												1
GCGGT		1											1
GGCGC	1												1
TGAAC	1												1
TGCTG			1										1
ACCGAT	1												1
ACCTGC												1	1
CACCGA	1												1
CAGCCC	1												1
CAGTCA	1												1
CCACCG	1												1
CCAGCG	1												1
CGGTAT		1											1
GAAGCC	1												1
GACGCT		1											1
GCAAGA		1											1
GCACAA	1												1
GCCGCA	1												1
GCTGGC	2												2
GCTGGT	1												1
GTTCCT	1												1
TCAGGC	1												1
TGCTAT				1									1
TGGCGT	1												1
TTCATA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AC/GT	-	-	-	1									1
CG/CG	-	-	-	6									6
AACTG/AGTTC	1												1
AAGGC/CCTTG	1												1
ACAGC/CTGTG			1										1
ACATC/ATGTG	1												1
ACCGC/CGGTG		1											1
AGGCG/CCTCG	1												1
CCGCG/CGCGG	1												1
AACAGG/CCTGTT	1												1
AACGCC/CGTTGG	1												1
AAGAGC/CTCTTG		1											1
AAGCAC/CTTGTG	1												1
AAGCCG/CGGCTT	1												1
AATAGC/ATTGCT				1									1
AATATG/ATATTC	1												1
ACACCG/CGGTGT	1												1
ACAGTC/ACTGTG	1												1
ACCAGC/CTGGTG	1												1
ACCGAT/ATCGGT	1	1											2
ACCGCC/CGGTGG	1												1
ACCTGC/AGGTGC												1	1
ACGCTG/AGCGTC		1											1
AGCCCC/CTGGGG	1												1
AGCCGC/CGGCTG	1												1
AGCCTG/AGGCTC	1												1
AGCGCC/CGCTGG	3												3
