Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-147/megassr/results/hub_GCF_041025935.1/fasta/hub_GCF_041025935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              180
Total size of examined sequences (bp):           4601114
Total number of identified SSRs:                 17
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	1
5	6
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																											1	1
AT	-	-	-	1																																																									1
CA	-	-	-	1																																																									1
TGG	-	-	1																																																										1
AAAAC	1																																																												1
AATAA	1																																																												1
ATTTA				1																																																									1
ATTTT	1																																																												1
GTAGG	1																																																												1
TACAA	1																																																												1
AATGGC									1																																																				1
AGCAAC	1																																																												1
ATTCGT	1																																																												1
CTGCAA	1																																																												1
CTTCAA	1																																																												1
GCTGCA	1																																																												1
TTGGTG				1																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																											1	1
AC/GT	-	-	-	1																																																									1
AT/AT	-	-	-	1																																																									1
ACC/GGT	-	-	1																																																										1
AAAAC/GTTTT	1																																																												1
AAAAT/ATTTT	2																																																												2
AAATT/AATTT				1																																																									1
AATAC/ATTGT	1																																																												1
ACCCT/AGGGT	1																																																												1
AACACC/GGTGTT				1																																																									1
AACAGC/CTGTTG	1																																																												1
AACTGC/AGTTGC	1																																																												1
AACTTC/AAGTTG	1																																																												1
AATACG/ATTCGT	1																																																												1
AATGGC/ATTGCC									1																																																				1
AGCTGC/AGCTGC	1																																																												1
