Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-101/megassr/results/hub_GCF_041025905.1/fasta/hub_GCF_041025905.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           2819176
Total number of identified SSRs:                 14
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1
3	3
5	7
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																												1																																													1	2
AT	-	-	-	1																																																																																																							1
ATT	-	-	1																																																																																																								1
TCA	-	-	1																																																																																																								1
TCT	-	-	1																																																																																																								1
AAAAT	1																																																																																																										1
AATAA	1																																																																																																										1
ACATG	2																																																																																																										2
TAAAT	1																																																																																																										1
TGTTA	1																																																																																																										1
TTAAT	1																																																																																																										1
TCTGCA	1																																																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	93	94	95	96	97	98	99	100	101	102	103	104	105	106	107	108	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																												1																																													1	2
AT/AT	-	-	-	1																																																																																																							1
AAG/CTT	-	-	1																																																																																																								1
AAT/ATT	-	-	1																																																																																																								1
ATC/ATG	-	-	1																																																																																																								1
AAAAT/ATTTT	2																																																																																																										2
AAATT/AATTT	2																																																																																																										2
AACAT/ATGTT	1																																																																																																										1
ACATG/ATGTC	2																																																																																																										2
AGATGC/ATCTGC	1																																																																																																										1
