Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_041025895.1/fasta/hub_GCF_041025895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              8
Total size of examined sequences (bp):           2685026
Total number of identified SSRs:                 15
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	6
3	1
4	2
5	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
CA	-	-	-	1			1				1	3
TA	-	-	-	2								2
TG	-	-	-	1								1
ATT	-	-	1									1
ATTA	-	1										1
TTAT	-	1										1
AAATC	1											1
ATAAT	1											1
ATATA	1											1
TAAAA	1											1
TAATC	1											1
TTTTA	1											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	total
AC/GT	-	-	-	2			1				1	4
AT/AT	-	-	-	2								2
AAT/ATT	-	-	1									1
AAAT/ATTT	-	1										1
AATT/AATT	-	1										1
AAAAT/ATTTT	2											2
AAATC/ATTTG	1											1
AATAT/ATATT	2											2
AATCT/AGATT	1											1
