Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-121/megassr/results/hub_GCF_041025875.1/fasta/hub_GCF_041025875.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           2679374
Total number of identified SSRs:                 12
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	1
4	2
5	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
TG	-	-	-	1	1
ATT	-	-	1		1
ATTA	-	1			1
TTAT	-	1			1
AAATC	1				1
ATAAT	1				1
ATATA	1				1
TAAAA	1				1
TAATC	1				1
TTTTA	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AC/GT	-	-	-	1	1
AT/AT	-	-	-	2	2
AAT/ATT	-	-	1		1
AAAT/ATTT	-	1			1
AATT/AATT	-	1			1
AAAAT/ATTTT	2				2
AAATC/ATTTG	1				1
AATAT/ATATT	2				2
AATCT/AGATT	1				1
