Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_041025855.1/fasta/hub_GCF_041025855.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              40
Total size of examined sequences (bp):           4751132
Total number of identified SSRs:                 26
Number of SSR containing sequences:              6
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	4
4	1
5	7
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
TA	-	-	-	2				2
ACC	-	-	1					1
AGC	-	-	1					1
CTG	-	-	1					1
TTA	-	-	1					1
TAAT	-	1						1
AAAAT	2							2
CTTTA	1							1
GTAGG	1							1
TATTT	1							1
TCAAA	1							1
TTTCA	1							1
AAACAT	1							1
AATAAC	1							1
AGTTTG							1	1
ATCGAT	1							1
ATTGCC			1					1
CAATAT	1							1
GCAGAA	1							1
GCTTGG	1							1
GTTTAG	1							1
TATTTT	1							1
TTAATT					1			1
TTCTGC	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	2				2
AAT/ATT	-	-	1					1
ACC/GGT	-	-	1					1
AGC/CTG	-	-	2					2
AATT/AATT	-	1						1
AAAAT/ATTTT	3							3
AAAGT/ACTTT	1							1
AAATC/ATTTG	1							1
AAATG/ATTTC	1							1
ACCCT/AGGGT	1							1
AAAAAT/ATTTTT	1							1
AAAATT/AATTTT					1			1
AAACAT/ATGTTT	1							1
AAACCT/AGGTTT	1							1
AAACTC/AGTTTG							1	1
AACAAT/ATTGTT	1							1
AAGCAG/CTGCTT	2							2
AAGCCC/CTTGGG	1							1
AATATC/ATATTG	1							1
AATGGC/ATTGCC			1					1
ATATCG/ATATCG	1							1
