Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-84/megassr/results/hub_GCF_041025755.1/fasta/hub_GCF_041025755.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              4
Total size of examined sequences (bp):           2634950
Total number of identified SSRs:                 15
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
4	1
5	6
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1		1
TA	-	-	-		2	2
TAA	-	-	1			1
TAT	-	-	1			1
TGC	-	-	1			1
AAAT	-	1				1
AATAA	1					1
ATTAT	1					1
TAAAA	1					1
TATAT	1					1
TTTAT	1					1
TTTTA	1					1
ATCAAA	1					1
TTTCTC	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	1	2	3
AAT/ATT	-	-	2			2
AGC/CTG	-	-	1			1
AAAT/ATTT	-	1				1
AAAAT/ATTTT	4					4
AATAT/ATATT	2					2
AAAATC/ATTTTG	1					1
AAAGAG/CTCTTT	1					1
