Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-121/megassr/results/hub_GCF_041025735.1/fasta/hub_GCF_041025735.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              9
Total size of examined sequences (bp):           4869010
Total number of identified SSRs:                 20
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	5
5	5
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																	1	1
AT	-	-	-	1																															1
TA	-	-	-	1																															1
CTG	-	-	1																																1
GGC	-	-	1																																1
TGC	-	-	1																																1
TTA	-	-	1																																1
TTG	-	-	1																																1
AATCT	1																																		1
ATTTG				1																															1
ATTTT	1																																		1
TAGAA	1																																		1
TTTAT	1																																		1
AAATTC	1																																		1
ATTAAA								1																											1
GCGAAT		1																																	1
GCGAGG	1																																		1
GCTGGG	1																																		1
TATTGC	1																																		1
TCAATA	1																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																	1	1
AT/AT	-	-	-	2																															2
AAC/GTT	-	-	1																																1
AAT/ATT	-	-	1																																1
AGC/CTG	-	-	2																																2
CCG/CGG	-	-	1																																1
AAAAT/ATTTT	2																																		2
AAATC/ATTTG				1																															1
AATAG/ATTCT	1																																		1
AATCT/AGATT	1																																		1
AAAATT/AATTTT								1																											1
AAATTC/AATTTG	1																																		1
AATAGC/ATTGCT	1																																		1
AATATC/ATATTG	1																																		1
AATGCG/ATTCGC		1																																	1
AGCCCC/CTGGGG	1																																		1
AGGGCG/CCCTCG	1																																		1
