Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_041025675.1/fasta/hub_GCF_041025675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              10
Total size of examined sequences (bp):           2652420
Total number of identified SSRs:                 26
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	3
4	1
5	7
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
ATT	-	-	1		1
GCA	-	-	1		1
TTC	-	-	1		1
TTTA	-	1			1
GAATA	1				1
GTATT	1				1
TATAT	1				1
TATTA	1				1
TTGTT	1				1
TTTTG	2				2
ATACTT	1				1
GTCTGC	4				4
TCTGCA	1				1
TCTGCG	6	1			7

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAG/CTT	-	-	1		1
AAT/ATT	-	-	1		1
AGC/CTG	-	-	1		1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	3				3
AATAC/ATTGT	1				1
AATAG/ATTCT	1				1
AATAT/ATATT	2				2
AAGTAT/ACTTAT	1				1
ACGCAG/CGTCTG	10	1			11
AGATGC/ATCTGC	1				1
