Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-146/megassr/results/hub_GCF_041025655.1/fasta/hub_GCF_041025655.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              17
Total size of examined sequences (bp):           5174039
Total number of identified SSRs:                 22
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	8
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	total
AT	-	-	-								1																																1
CA	-	-	-	1																																							1
ACC	-	-	1																																								1
AAAAC	1																																										1
AAAAT	2																																										2
AATAA	1																																										1
AATTT	1																																										1
ATTAA		1																																									1
GTAGG	1																																										1
TTTTC	1																																										1
AAATTA				1																																							1
AATGGC							1																																				1
ACCAAC																																										1	1
ACGAAT	1																																										1
ATGATT								1																																			1
ATTATG		1																																									1
ATTTAT						1																																					1
GCTGCA	1																																										1
TGAATG	1																																										1
TTGAAG	1																																										1
TTTTTC	1																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	total
AC/GT	-	-	-	1																																							1
AT/AT	-	-	-								1																																1
ACC/GGT	-	-	1																																								1
AAAAC/GTTTT	1																																										1
AAAAG/CTTTT	1																																										1
AAAAT/ATTTT	3																																										3
AAATT/AATTT	1	1																																									2
ACCCT/AGGGT	1																																										1
AAAAAG/CTTTTT	1																																										1
AAAATT/AATTTT				1																																							1
AAATAT/ATATTT						1																																					1
AACACC/GGTGTT																																										1	1
AACTTC/AAGTTG	1																																										1
AATACG/ATTCGT	1																																										1
AATCAT/ATGATT		1						1																																			2
AATGGC/ATTGCC							1																																				1
AATGTG/ACATTC	1																																										1
AGCTGC/AGCTGC	1																																										1
