Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-143/megassr/results/hub_GCF_041025595.1/fasta/hub_GCF_041025595.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           4779767
Total number of identified SSRs:                 18
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1
3	3
4	1
5	6
6	5

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																					1			1	2
TA	-	-	-	1																																																						1
CTG	-	-	1																																																							1
GGT	-	-	1																																																							1
TGC	-	-	1																																																							1
AACT	-	1																																																								1
AAAAT	2																																																									2
AAATG	1																																																									1
ATAGA	1																																																									1
CTTTA	1																																																									1
TCAAA	1																																																									1
AGTTTG			1																																																							1
ATCGAT	1																																																									1
CAATAT	1																																																									1
GCAGAA	1																																																									1
TTCTGC	1																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																					1			1	2
AT/AT	-	-	-	1																																																						1
ACC/GGT	-	-	1																																																							1
AGC/CTG	-	-	2																																																							2
AACT/AGTT	-	1																																																								1
AAAAT/ATTTT	2																																																									2
AAAGT/ACTTT	1																																																									1
AAATC/ATTTG	1																																																									1
AAATG/ATTTC	1																																																									1
AATAG/ATTCT	1																																																									1
AAACTC/AGTTTG			1																																																							1
AAGCAG/CTGCTT	2																																																									2
AATATC/ATATTG	1																																																									1
ATATCG/ATATCG	1																																																									1
