Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-142/megassr/results/hub_GCF_041025575.1/fasta/hub_GCF_041025575.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              9
Total size of examined sequences (bp):           5160798
Total number of identified SSRs:                 22
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	1
5	8
6	11

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	total
AT	-	-	-							1																											1
TG	-	-	-	1																																	1
TGG	-	-	1																																		1
AGAAA	1																																				1
ATTAA	1																																				1
ATTTA		1																																			1
ATTTT	2																																				2
GTAGG	1																																				1
GTTTT	1																																				1
TTATT	1																																				1
AAATAT						1																															1
AAATTA				1																																	1
AATCAT												1																									1
AGAAAA	1																																				1
ATTCGT	1																																				1
CACATT	1																																				1
CTTCAA	1																																				1
TGCAGC	1																																				1
TGCCAT							1																														1
TGGTGT																																				1	1
TTGGTG			1																																		1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	total
AC/GT	-	-	-	1																																	1
AT/AT	-	-	-							1																											1
ACC/GGT	-	-	1																																		1
AAAAC/GTTTT	1																																				1
AAAAG/CTTTT	1																																				1
AAAAT/ATTTT	3																																				3
AAATT/AATTT	1	1																																			2
ACCCT/AGGGT	1																																				1
AAAAAG/CTTTTT	1																																				1
AAAATT/AATTTT				1																																	1
AAATAT/ATATTT						1																															1
AACACC/GGTGTT			1																																	1	2
AACTTC/AAGTTG	1																																				1
AATACG/ATTCGT	1																																				1
AATCAT/ATGATT												1																									1
AATGGC/ATTGCC							1																														1
AATGTG/ACATTC	1																																				1
AGCTGC/AGCTGC	1																																				1
