Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_041025525.1/fasta/hub_GCF_041025525.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              19
Total size of examined sequences (bp):           4548253
Total number of identified SSRs:                 19
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
2	1
3	3
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1					1	2
TA	-	-	-	1																									1
ACC	-	-	1																										1
CAG	-	-	1																										1
TGC	-	-	1																										1
AAAAT	1	1																											2
CTTTA	1																												1
GTAGG	1																												1
TTAAG	1																												1
AAACAT	1																												1
AAGCAG	1																												1
AGTTTG			1																										1
ATATTG	1																												1
ATCGAT	1																												1
CTTCTG	1																												1
TAGCTG	1																												1
TTTTAT	1																												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-						1					1	2
AT/AT	-	-	-	1																									1
ACC/GGT	-	-	1																										1
AGC/CTG	-	-	2																										2
AAAAT/ATTTT	1	1																											2
AAAGT/ACTTT	1																												1
AACTT/AAGTT	1																												1
ACCCT/AGGGT	1																												1
AAAAAT/ATTTTT	1																												1
AAACAT/ATGTTT	1																												1
AAACTC/AGTTTG			1																										1
AAGCAG/CTGCTT	2																												2
AATATC/ATATTG	1																												1
ACAGCT/AGCTGT	1																												1
ATATCG/ATATCG	1																												1
