Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-141/megassr/results/hub_GCF_041025435.1/fasta/hub_GCF_041025435.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              31
Total size of examined sequences (bp):           4591968
Total number of identified SSRs:                 21
Number of SSR containing sequences:              5
Number of sequences containing more than 1 SSR:  4
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	9
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
TG	-	-	-	1			1
ACC	-	-	1				1
GAT	-	-		1			1
TTA	-	-	1				1
AAAAC	1						1
AACCC	1						1
AATAA	1						1
AGTTA				2			2
ATTAA			1				1
TATTT	2						2
TTTTC	1						1
AAATGA	1						1
ACGAAT	1						1
ATGAAA	1						1
ATTGCC			1				1
CAACAC						1	1
TGCAGC	1						1
TTCATT	1						1
TTGAAG	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AC/GT	-	-	-	1			1
AAT/ATT	-	-	1				1
ACC/GGT	-	-	1				1
ATC/ATG	-	-		1			1
AAAAC/GTTTT	1						1
AAAAG/CTTTT	1						1
AAAAT/ATTTT	3						3
AAATT/AATTT			1				1
AACCC/GGGTT	1						1
AACTT/AAGTT				2			2
AAAATG/ATTTTC	3						3
AACACC/GGTGTT						1	1
AACTTC/AAGTTG	1						1
AATACG/ATTCGT	1						1
AATGGC/ATTGCC			1				1
AGCTGC/AGCTGC	1						1
