Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_041025395.1/fasta/hub_GCF_041025395.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           2551106
Total number of identified SSRs:                 34
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    4


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	1
4	1
5	5
6	23

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT	-	-	-	1					1
TA	-	-	-	2				1	3
AAT	-	-	1						1
TAAA	-	1							1
AAACA	1								1
CAAAA	2								2
GTATT	1								1
TAATA	1								1
GACAGC	3								3
GACTCA	4								4
GATTCA			1						1
TCAGAC	3								3
TCAGAT	12								12

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	total
AT/AT	-	-	-	3				1	4
AAT/ATT	-	-	1						1
AAAT/ATTT	-	1							1
AAAAC/GTTTT	3								3
AATAC/ATTGT	1								1
AATAT/ATATT	1								1
AATCTG/AGATTC	12		1						13
ACAGCG/CGCTGT	3								3
ACTCAG/AGTCTG	7								7
