Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-125/megassr/results/hub_GCF_041025315.1/fasta/hub_GCF_041025315.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              59
Total size of examined sequences (bp):           2609953
Total number of identified SSRs:                 13
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	3
4	1
5	4
6	1

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	2		2
TA	-	-	-	1	1	2
ATC	-	-	1			1
GAA	-	-	1			1
TTC	-	-	1			1
AATT	-	1				1
AATAA	1					1
AATTT	1					1
AGTAC	1					1
CAACA	1					1
GATGAA	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	3	1	4
AAG/CTT	-	-	2			2
ATC/ATG	-	-	1			1
AATT/AATT	-	1				1
AAAAT/ATTTT	1					1
AAATT/AATTT	1					1
AACAC/GTGTT	1					1
ACAGT/ACTGT	1					1
AAGATG/ATCTTC	1					1
