Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-124/megassr/results/hub_GCF_041025295.1/fasta/hub_GCF_041025295.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              59
Total size of examined sequences (bp):           2607115
Total number of identified SSRs:                 14
Number of SSR containing sequences:              7
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
4	2
5	4
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	total
AT	-	-	-	1			1
TA	-	-	-		1	1	2
GAA	-	-	1				1
TGA	-	-	1				1
TTC	-	-	1				1
AATT	-	1					1
TTAT	-	1					1
AATAA	1						1
AATTT	1						1
GTACT	1						1
TGTTG	1						1
CTATTA	1						1
GATGAA	1						1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	total
AT/AT	-	-	-	1	1	1	3
AAG/CTT	-	-	2				2
ATC/ATG	-	-	1				1
AAAT/ATTT	-	1					1
AATT/AATT	-	1					1
AAAAT/ATTTT	1						1
AAATT/AATTT	1						1
AACAC/GTGTT	1						1
ACAGT/ACTGT	1						1
AAGATG/ATCTTC	1						1
AATAGT/ACTATT	1						1
