Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-140/megassr/results/hub_GCF_041025215.1/fasta/hub_GCF_041025215.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              115
Total size of examined sequences (bp):           4720031
Total number of identified SSRs:                 22
Number of SSR containing sequences:              12
Number of sequences containing more than 1 SSR:  7
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	2
3	3
4	1
5	8
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																								1	1
CA	-	-	-	1																																																						1
TA	-	-	-	1																																																						1
ACC	-	-	1																																																							1
TAA	-	-	1																																																							1
TTA	-	-	1																																																							1
AATA	-	1																																																								1
AAAAC	1																																																									1
AATAA	1																																																									1
AGTTA			1																																																							1
ATAAA	1																																																									1
ATTAA		1																																																								1
TATTT	1																																																									1
TTTTA	1																																																									1
TTTTC	1																																																									1
AATGGC				1																																																						1
ACACCC	1																																																									1
ACGAAT	1																																																									1
CAAAAG				1																																																						1
CAACAC					1																																																					1
CTTCAA	1																																																									1
GCTGCA	1																																																									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																								1	1
AC/GT	-	-	-	1																																																						1
AT/AT	-	-	-	1																																																						1
AAT/ATT	-	-	2																																																							2
ACC/GGT	-	-	1																																																							1
AAAT/ATTT	-	1																																																								1
AAAAC/GTTTT	1																																																									1
AAAAG/CTTTT	1																																																									1
AAAAT/ATTTT	4																																																									4
AAATT/AATTT		1																																																								1
AACTT/AAGTT			1																																																							1
AAAAGC/CTTTTG				1																																																						1
AACACC/GGTGTT					1																																																					1
AACTTC/AAGTTG	1																																																									1
AATACG/ATTCGT	1																																																									1
AATGGC/ATTGCC				1																																																						1
ACACCC/GGGTGT	1																																																									1
AGCTGC/AGCTGC	1																																																									1
