Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-134/megassr/results/hub_GCF_041025195.1/fasta/hub_GCF_041025195.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              112
Total size of examined sequences (bp):           4854234
Total number of identified SSRs:                 25
Number of SSR containing sequences:              15
Number of sequences containing more than 1 SSR:  8
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	3
2	1
3	4
5	8
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	total
A	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																													1																																				1	3
TA	-	-	-	1																																																																																1
CAG	-	-	1																																																																																	1
GGT	-	-	1																																																																																	1
TAA	-	-	1																																																																																	1
TGC	-	-	1																																																																																	1
AAAAT		1																																																																																		1
ATAAA	1																																																																																			1
ATTAA				1																																																																																1
GTAGG	1																																																																																			1
TAAAG	1																																																																																			1
TAAGC	1																																																																																			1
TATTT	1																																																																																			1
TTTCA	1																																																																																			1
AAAAAT	1																																																																																			1
AAGCAG	1																																																																																			1
AGTTTG	1																																																																																			1
ATATTG	1																																																																																			1
ATCGAT	1																																																																																			1
ATTATG	1																																																																																			1
CTGCAA	1																																																																																			1
CTTCTG	1																																																																																			1
TTATGT	1																																																																																			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	1																													1																																				1	3
AT/AT	-	-	-	1																																																																																1
AAT/ATT	-	-	1																																																																																	1
ACC/GGT	-	-	1																																																																																	1
AGC/CTG	-	-	2																																																																																	2
AAAAT/ATTTT	2	1																																																																																		3
AAAGT/ACTTT	1																																																																																			1
AAATG/ATTTC	1																																																																																			1
AAATT/AATTT				1																																																																																1
AAGCT/AGCTT	1																																																																																			1
ACCCT/AGGGT	1																																																																																			1
AAAAAT/ATTTTT	1																																																																																			1
AAACAT/ATGTTT	1																																																																																			1
AAACTC/AGTTTG	1																																																																																			1
AACTGC/AGTTGC	1																																																																																			1
AAGCAG/CTGCTT	2																																																																																			2
AATATC/ATATTG	1																																																																																			1
AATCAT/ATGATT	1																																																																																			1
ATATCG/ATATCG	1																																																																																			1
