Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-122/megassr/results/hub_GCF_041025155.1/fasta/hub_GCF_041025155.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           2729437
Total number of identified SSRs:                 14
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	3
3	3
4	1
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT	-	-	-	1							1
TA	-	-	-	1						1	2
GAA	-	-	1								1
TGA	-	-	1								1
TTC	-	-	1								1
TTGT	-	1									1
AAATT	1										1
GTACT	1										1
TAGAA	1										1
TGTTG	1										1
TTATT	1										1
AGTAAT			1								1
TTCATC	1										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AT/AT	-	-	-	2						1	3
AAG/CTT	-	-	2								2
ATC/ATG	-	-	1								1
AAAC/GTTT	-	1									1
AAAAT/ATTTT	1										1
AAATT/AATTT	1										1
AACAC/GTGTT	1										1
AATAG/ATTCT	1										1
ACAGT/ACTGT	1										1
AAGATG/ATCTTC	1										1
AATAGT/ACTATT			1								1
