Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-138/megassr/results/hub_GCF_041025115.1/fasta/hub_GCF_041025115.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              91
Total size of examined sequences (bp):           4423844
Total number of identified SSRs:                 18
Number of SSR containing sequences:              13
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	3
5	5
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																										1	1
TA	-	-	-	1																																																								1
AGC	-	-	1																																																									1
CTG	-	-	1																																																									1
GGT	-	-	1																																																									1
AAATG	1																																																											1
ATAAA	1																																																											1
CTTTA	1																																																											1
GCTTA	1																																																											1
TATTT		1																																																										1
AAGCAG	1																																																											1
AGTTTG			1																																																									1
ATATTG	1																																																											1
ATCGAT	1																																																											1
CTGGCT				1																																																								1
GCAGAA	1																																																											1
TTATGT	1																																																											1
TTATTT	1																																																											1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																										1	1
AT/AT	-	-	-	1																																																								1
ACC/GGT	-	-	1																																																									1
AGC/CTG	-	-	2																																																									2
AAAAT/ATTTT	1	1																																																										2
AAAGT/ACTTT	1																																																											1
AAATG/ATTTC	1																																																											1
AAGCT/AGCTT	1																																																											1
AAAAAT/ATTTTT	1																																																											1
AAACAT/ATGTTT	1																																																											1
AAACTC/AGTTTG			1																																																									1
AAGCAG/CTGCTT	2																																																											2
AATATC/ATATTG	1																																																											1
AGAGCC/CTCTGG				1																																																								1
ATATCG/ATATCG	1																																																											1
