Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-135/megassr/results/hub_GCF_041025095.1/fasta/hub_GCF_041025095.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           2589345
Total number of identified SSRs:                 37
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    12


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
4	1
5	5
6	27

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	1	1
ATT	-	-	1		1
GCA	-	-	1		1
TTC	-	-	1		1
TTTA	-	1			1
GAATA	1				1
TATTA	1				1
TTGTT	1				1
TTTTG	2				2
ATACTT	1				1
GTCTGA	17	3			20
TCTGAA	3	2			5
TCTGAG	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	1	1
AAG/CTT	-	-	1		1
AAT/ATT	-	-	1		1
AGC/CTG	-	-	1		1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	3				3
AATAG/ATTCT	1				1
AATAT/ATATT	1				1
AAGTAT/ACTTAT	1				1
AATCTG/AGATTC	3	2			5
ACTCAG/AGTCTG	18	3			21
