Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-137/megassr/results/hub_GCF_041025055.1/fasta/hub_GCF_041025055.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           4892464
Total number of identified SSRs:                 27
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	1
5	9
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
AT	-	-	-		1																																	1
TG	-	-	-	1																																		1
TGG	-	-	1																																			1
TTA	-	-	1																																			1
ATTT	-																			1																		1
AATTT	1																																					1
AGAAA	1																																					1
ATTAA	1																																					1
ATTTA	1																																					1
ATTTT	3																																					3
GTTTT	1																																					1
TTATT	1																																					1
AAAATG	1																																					1
AAATAT														1																								1
AATCAT						1																																1
AGAAAA	1																																					1
ATTCGT	1																																					1
CACATT	1																																					1
CTTCAA	1																																					1
TAGTAT	1																																					1
TCTGGC	1																																					1
TGCAGC	1																																					1
TGCCAT			1																																			1
TTGGTG																																					1	1
TTTGAC	1																																					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	total
AC/GT	-	-	-	1																																		1
AT/AT	-	-	-		1																																	1
AAT/ATT	-	-	1																																			1
ACC/GGT	-	-	1																																			1
AAAT/ATTT	-																			1																		1
AAAAC/GTTTT	1																																					1
AAAAG/CTTTT	1																																					1
AAAAT/ATTTT	4																																					4
AAATT/AATTT	3																																					3
AAAAAG/CTTTTT	1																																					1
AAAATG/ATTTTC	1																																					1
AAAGTC/ACTTTG	1																																					1
AAATAT/ATATTT														1																								1
AACACC/GGTGTT																																					1	1
AACTTC/AAGTTG	1																																					1
AATACG/ATTCGT	1																																					1
AATACT/AGTATT	1																																					1
AATCAT/ATGATT						1																																1
AATGGC/ATTGCC			1																																			1
AATGTG/ACATTC	1																																					1
AGAGCC/CTCTGG	1																																					1
AGCTGC/AGCTGC	1																																					1
