Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-136/megassr/results/hub_GCF_041025015.1/fasta/hub_GCF_041025015.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              12
Total size of examined sequences (bp):           4744003
Total number of identified SSRs:                 24
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	3
4	2
5	10
6	7

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	total
T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																									1	1
TG	-	-	-	1																																																																																							1
CAT	-	-	1																																																																																								1
GAT	-	-	1																																																																																								1
TGG	-	-	1																																																																																								1
AATG	-	1																																																																																									1
TTGT	-	1																																																																																									1
AAAAT	1																																																																																										1
AATAA	1																																																																																										1
AGAAA	1																																																																																										1
ATTTA		1																																																																																									1
ATTTT	2																																																																																										2
CCCTC	1																																																																																										1
GTTTT	1																																																																																										1
TATTT	1																																																																																										1
TTATT	1																																																																																										1
AAATAG	1																																																																																										1
ATGGAG		1																																																																																									1
ATTCGT	1																																																																																										1
CTTCAA	1																																																																																										1
GTTGGG		1																																																																																									1
TGCCAT		1																																																																																									1
TGGTGT	1																																																																																										1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	48	49	50	51	52	53	54	55	56	57	58	59	60	61	62	63	64	65	66	67	68	69	70	71	72	73	74	75	76	77	78	79	80	81	82	83	84	85	86	87	88	89	90	91	92	total
A/T	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																																																																									1	1
AC/GT	-	-	-	1																																																																																							1
ACC/GGT	-	-	1																																																																																								1
ATC/ATG	-	-	2																																																																																								2
AAAC/GTTT	-	1																																																																																									1
AATG/ATTC	-	1																																																																																									1
AAAAC/GTTTT	1																																																																																										1
AAAAG/CTTTT	1																																																																																										1
AAAAT/ATTTT	6																																																																																										6
AAATT/AATTT		1																																																																																									1
AGGGG/CCCCT	1																																																																																										1
AAATAG/ATTTCT	1																																																																																										1
AACACC/GGTGTT	1																																																																																										1
AACCCC/GGGGTT		1																																																																																									1
AACTTC/AAGTTG	1																																																																																										1
AATACG/ATTCGT	1																																																																																										1
AATGGC/ATTGCC		1																																																																																									1
AGATGG/ATCTCC		1																																																																																									1
