Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-133/megassr/results/hub_GCF_041024975.1/fasta/hub_GCF_041024975.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              6
Total size of examined sequences (bp):           2607433
Total number of identified SSRs:                 24
Number of SSR containing sequences:              4
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	2
4	1
5	7
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	total
TA	-	-	-	2	2
AAT	-	-	1		1
TGC	-	-	1		1
TTTA	-	1			1
AAACA	1				1
AATAC	1				1
ATATA	1				1
CAAAA	2				2
TAATA	1				1
TATTC	1				1
ATAAGA	1				1
GCATCT	2				2
GTCTGC	3				3
TCTGCG	3	1	1		5
TTTGAC	1				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	total
AT/AT	-	-	-	2	2
AAT/ATT	-	-	1		1
AGC/CTG	-	-	1		1
AAAT/ATTT	-	1			1
AAAAC/GTTTT	3				3
AATAC/ATTGT	1				1
AATAG/ATTCT	1				1
AATAT/ATATT	2				2
AAAGTC/ACTTTG	1				1
AAGAAT/ATTCTT	1				1
ACGCAG/CGTCTG	6	1	1		8
AGATGC/ATCTGC	2				2
