Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_041024955.1/fasta/hub_GCF_041024955.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              14
Total size of examined sequences (bp):           4130431
Total number of identified SSRs:                 14
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
4	2
5	1
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
ATG	-	-	1										1
TAT	-	-	1										1
ATAG	-			1									1
CTAT	-		1										1
TAAAA	1												1
ATTAGA	1												1
CCAGCA			1										1
CTGTTG								1					1
GCGAGG	1												1
GCTGGG	1												1
TCCAGC												1	1
TCCTTA							1						1
TGGTCA	1												1
TTTTTA	1												1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AAT/ATT	-	-	1										1
ATC/ATG	-	-	1										1
AGAT/ATCT	-		1	1									2
AAAAT/ATTTT	1												1
AAAAAT/ATTTTT	1												1
AACAGC/CTGTTG								1					1
AAGGAT/ATCCTT							1						1
AATTAG/AATTCT	1												1
ACCAGC/CTGGTG			1										1
ACCATG/ATGGTC	1												1
AGCCCC/CTGGGG	1												1
AGCTCC/AGCTGG												1	1
AGGGCG/CCCTCG	1												1
