Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-132/megassr/results/hub_GCF_041024935.1/fasta/hub_GCF_041024935.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           2607822
Total number of identified SSRs:                 13
Number of SSR containing sequences:              1
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	4
3	2
4	1
5	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	total
AT	-	-	-	2				2
TA	-	-	-	1			1	2
ATT	-	-	1					1
GCA	-	-	1					1
TTTA	-	1						1
AATAC	1							1
GAATA	1							1
TATAT	1							1
TATTA	1							1
TTGTT	1							1
TTTTG	1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	total
AT/AT	-	-	-	3			1	4
AAT/ATT	-	-	1					1
AGC/CTG	-	-	1					1
AAAT/ATTT	-	1						1
AAAAC/GTTTT	2							2
AATAC/ATTGT	1							1
AATAG/ATTCT	1							1
AATAT/ATATT	2							2
