Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_041024895.1/fasta/hub_GCF_041024895.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              13
Total size of examined sequences (bp):           4099372
Total number of identified SSRs:                 15
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	2
3	2
4	2
5	1
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	total
G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1														1	2
ATA	-	-	1																																		1
ATG	-	-	1																																		1
ATAG	-			1																																	1
CTAT	-		1																																		1
TAAAA	1																																				1
ATTAGA	1																																				1
CCAGCA			1																																		1
CTGTTG								1																													1
GCGAGG	1																																				1
TCCAGC												1																									1
TCCTTA							1																														1
TGGTCA	1																																				1
TTTTTA	1																																				1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-					1														1	2
AAT/ATT	-	-	1																																		1
ATC/ATG	-	-	1																																		1
AGAT/ATCT	-		1	1																																	2
AAAAT/ATTTT	1																																				1
AAAAAT/ATTTTT	1																																				1
AACAGC/CTGTTG								1																													1
AAGGAT/ATCCTT							1																														1
AATTAG/AATTCT	1																																				1
ACCAGC/CTGGTG			1																																		1
ACCATG/ATGGTC	1																																				1
AGCTCC/AGCTGG												1																									1
AGGGCG/CCCTCG	1																																				1
