Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-119/megassr/results/hub_GCF_041024865.1/fasta/hub_GCF_041024865.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              5
Total size of examined sequences (bp):           5002834
Total number of identified SSRs:                 19
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	2
3	6
5	5
6	6

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	total
AT	-	-	-	1		1
TA	-	-	-	1		1
AGA	-	-	1			1
CAA	-	-	1			1
CAG	-	-	1			1
GCA	-	-	1			1
GCC	-	-	1			1
TAA	-	-	1			1
AAAAT	1					1
AATAA	1					1
AATCA				1		1
ATTAG	1					1
TTCTA	1					1
ATAGCA		1				1
ATTCGC		1				1
ATTTTA					1	1
TATTGA	1					1
TGAATT	1					1
TTTTAT	1					1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	total
AT/AT	-	-	-	2		2
AAC/GTT	-	-	1			1
AAG/CTT	-	-	1			1
AAT/ATT	-	-	1			1
AGC/CTG	-	-	2			2
CCG/CGG	-	-	1			1
AAAAT/ATTTT	2					2
AAATC/ATTTG				1		1
AATAG/ATTCT	1					1
AATCT/AGATT	1					1
AAAAAT/ATTTTT	1					1
AAAATT/AATTTT					1	1
AAATTC/AATTTG	1					1
AATAGC/ATTGCT		1				1
AATATC/ATATTG	1					1
AATGCG/ATTCGC		1				1
