Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-116/megassr/results/hub_GCF_041024815.1/fasta/hub_GCF_041024815.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              43
Total size of examined sequences (bp):           4094280
Total number of identified SSRs:                 21
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	3
5	3
6	12

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
GT	-	-	-	1							1
ACC	-	-	1								1
TAT	-	-	1								1
AGAT	-									1	1
TAAA	-	1									1
TTTA	-	1									1
AACCC	1										1
AATCG	1										1
TTTTA	1										1
AAAAAT	2										2
AAAATT				1							1
ACAGCA						1					1
ATAAAA	1										1
ATATGA	1										1
CATGAC	1										1
GAAAGA	1										1
GATAAG						1					1
GGTGCT			1								1
TATCTG	1										1
TGGAGC				1							1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	total
AC/GT	-	-	-	1							1
AAT/ATT	-	-	1								1
ACC/GGT	-	-	1								1
AAAT/ATTT	-	2									2
AGAT/ATCT	-									1	1
AAAAT/ATTTT	1										1
AACCC/GGGTT	1										1
AATCG/ATTCG	1										1
AAAAAT/ATTTTT	3										3
AAAATT/AATTTT				1							1
AAAGAG/CTCTTT	1										1
AACAGC/CTGTTG						1					1
AAGGAT/ATCCTT						1					1
AATATG/ATATTC	1										1
ACAGAT/ATCTGT	1										1
ACCAGC/CTGGTG			1								1
ACCATG/ATGGTC	1										1
AGCTCC/AGCTGG				1							1
