Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-115/megassr/results/hub_GCF_041024775.1/fasta/hub_GCF_041024775.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              2
Total size of examined sequences (bp):           4120279
Total number of identified SSRs:                 14
Number of SSR containing sequences:              2
Number of sequences containing more than 1 SSR:  2
Number of SSRs present in compound formation:    1


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	2
4	2
5	1
6	9

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
ATA	-	-	1										1
ATC	-	-	1										1
AGAT	-		1										1
TCTA	-			1									1
TTTTA	1												1
ACAGCA								1					1
ATAAAA	1												1
CGCCCT	1												1
GCCCCA	1												1
GGATAA							1						1
GTGCTG			1										1
TCTAAT	1												1
TGACCA	1												1
TGGAGC												1	1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	total
AAT/ATT	-	-	1										1
ATC/ATG	-	-	1										1
AGAT/ATCT	-		1	1									2
AAAAT/ATTTT	1												1
AAAAAT/ATTTTT	1												1
AACAGC/CTGTTG								1					1
AAGGAT/ATCCTT							1						1
AATTAG/AATTCT	1												1
ACCAGC/CTGGTG			1										1
ACCATG/ATGGTC	1												1
AGCCCC/CTGGGG	1												1
AGCTCC/AGCTGG												1	1
AGGGCG/CCCTCG	1												1
