Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-134/megassr/results/hub_GCF_041024715.1/fasta/hub_GCF_041024715.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              24
Total size of examined sequences (bp):           4775301
Total number of identified SSRs:                 28
Number of SSR containing sequences:              8
Number of sequences containing more than 1 SSR:  5
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	3
5	11
6	13

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
TG	-	-	-	1														1
ACC	-	-	1															1
TAA	-	-	1															1
TTA	-	-	1															1
AAAAT	1																	1
AAATA	3																	3
AGAAA	1																	1
ATTTA				1														1
ATTTT	2																	2
CCTAC	1																	1
GTTTT	1																	1
TTATT	1																	1
AAAGAA			1															1
AAATAT			1															1
AATGGC			1															1
AGAACC											1							1
AGAGCC		1																1
ATAAAT																	1	1
ATTCGT	1																	1
CACATT	1																	1
GTTGGT			1															1
TGCAGC	1																	1
TTGAAG	1																	1
TTGCAG	1																	1
TTGGTG		1																1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	total
AC/GT	-	-	-	1														1
AAT/ATT	-	-	2															2
ACC/GGT	-	-	1															1
AAAAC/GTTTT	1																	1
AAAAG/CTTTT	1																	1
AAAAT/ATTTT	7																	7
AAATT/AATTT				1														1
ACCCT/AGGGT	1																	1
AAAAAG/CTTTTT			1															1
AAATAT/ATATTT			1														1	2
AACACC/GGTGTT		1	1															2
AACCAG/CTGGTT											1							1
AACTGC/AGTTGC	1																	1
AACTTC/AAGTTG	1																	1
AATACG/ATTCGT	1																	1
AATGGC/ATTGCC			1															1
AATGTG/ACATTC	1																	1
AGAGCC/CTCTGG		1																1
AGCTGC/AGCTGC	1																	1
