Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-80/megassr/results/hub_GCF_041024675.1/fasta/hub_GCF_041024675.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              286
Total size of examined sequences (bp):           4015432
Total number of identified SSRs:                 15
Number of SSR containing sequences:              14
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    0


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
3	5
5	2
6	8

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	total
AGA	-	-	1	1
CAG	-	-	1	1
CCG	-	-	1	1
CGG	-	-	1	1
GGT	-	-	1	1
GCGGC	1			1
TATGT	1			1
CAGACG	1			1
GATGAG	1			1
GCCAGC	1			1
GGTTTT		1		1
GTGGCG	1			1
TCGCTT	1			1
TCTGGT	1			1
TTTTTA	1			1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	total
AAG/CTT	-	-	1	1
ACC/GGT	-	-	1	1
AGC/CTG	-	-	1	1
CCG/CGG	-	-	2	2
AACAT/ATGTT	1			1
CCGCG/CGCGG	1			1
AAAAAT/ATTTTT	1			1
AAAACC/GGTTTT		1		1
AAAGCG/CGCTTT	1			1
AACCAG/CTGGTT	1			1
ACCGCC/CGGTGG	1			1
ACGCAG/CGTCTG	1			1
AGCGCC/CGCTGG	1			1
AGGATG/ATCCTC	1			1
