Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-118/megassr/results/hub_GCF_041024665.1/fasta/hub_GCF_041024665.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              24
Total size of examined sequences (bp):           4676157
Total number of identified SSRs:                 15
Number of SSR containing sequences:              3
Number of sequences containing more than 1 SSR:  1
Number of SSRs present in compound formation:    3


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
2	1
3	2
4	5
5	5
6	2

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT	-	-	-	1						1
CTG	-	-	1							1
GGC	-	-	1							1
GGTT	-		1							1
TAGG	-	2								2
TGGT	-		1							1
TTGG	-								1	1
AACCC	1									1
ATTTG				1						1
CTCAA	1									1
GGTTG		1								1
TAGAA	1									1
GCGAGG	1									1
TCAATA	1									1

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	total
AT/AT	-	-	-	1						1
AGC/CTG	-	-	1							1
CCG/CGG	-	-	1							1
AACC/GGTT	-		2						1	3
ACCT/AGGT	-	2								2
AAATC/ATTTG				1						1
AACCC/GGGTT	1	1								2
AACTC/AGTTG	1									1
AATAG/ATTCT	1									1
AATATC/ATATTG	1									1
AGGGCG/CCCTCG	1									1
