Specifications
==============

Sequence source file: "/home/zmahmoud/github-projects/africandsi-megassr/laptop_run_20261012/work/megassr-local-133/megassr/results/hub_GCF_041024645.1/fasta/hub_GCF_041024645.1_genomic.fa"

Definement of microsatellites (unit size / minimum number of repeats):
(1/20) (2/6) (3/5) (4/4) (5/3) (6/3) 

Maximal number of bases interrupting 2 SSRs in a compound microsatellite:  100



RESULTS OF MICROSATELLITE SEARCH
================================

Total number of sequences examined:              48
Total size of examined sequences (bp):           4500314
Total number of identified SSRs:                 26
Number of SSR containing sequences:              9
Number of sequences containing more than 1 SSR:  3
Number of SSRs present in compound formation:    2


Distribution to different repeat type classes
---------------------------------------------

Unit size	Number of SSRs
1	1
2	1
3	3
4	3
5	8
6	10

Frequency of identified SSR motifs
----------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	total
C	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																												1	1
CA	-	-	-	1																																										1
ACC	-	-	1																																											1
CAT	-	-	2																																											2
TAGT	-	2																																												2
TTGT	-	1																																												1
AAAAT	1																																													1
AGAAA	1																																													1
ATTAA		1																																												1
ATTTT	2																																													2
GTTTT	1																																													1
TTATT	2																																													2
AAATAG	1																																													1
ATTCGT	1																																													1
CGCCCT	1																																													1
TCTCCA		2																																												2
TGCCAT		1																																												1
TGGTGT	1																																													1
TTGAAG	1																																													1
TTGGTG	2																																													2

Frequency of classified repeat types (considering sequence complementary)
-------------------------------------------------------------------------

Repeats	3	4	5	6	7	8	9	10	11	12	13	14	15	16	17	18	19	20	21	22	23	24	25	26	27	28	29	30	31	32	33	34	35	36	37	38	39	40	41	42	43	44	45	46	47	total
C/G	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-	-																												1	1
AC/GT	-	-	-	1																																										1
ACC/GGT	-	-	1																																											1
ATC/ATG	-	-	2																																											2
AAAC/GTTT	-	1																																												1
AACT/AGTT	-	2																																												2
AAAAC/GTTTT	1																																													1
AAAAG/CTTTT	1																																													1
AAAAT/ATTTT	5																																													5
AAATT/AATTT		1																																												1
AAATAG/ATTTCT	1																																													1
AACACC/GGTGTT	3																																													3
AACTTC/AAGTTG	1																																													1
AATACG/ATTCGT	1																																													1
AATGGC/ATTGCC		1																																												1
AGATGG/ATCTCC		2																																												2
AGGGCG/CCCTCG	1																																													1
